Welcome to the new bioconductor.org!

rain

Rhythmicity Analysis Incorporating Non-parametric Methods


Bioconductor version: Release (3.18)

This package uses non-parametric methods to detect rhythms in time series. It deals with outliers, missing values and is optimized for time series comprising 10-100 measurements. As it does not assume expect any distinct waveform it is optimal or detecting oscillating behavior (e.g. circadian or cell cycle) in e.g. genome- or proteome-wide biological measurements such as: micro arrays, proteome mass spectrometry, or metabolome measurements.

Author: Paul F. Thaben, Pål O. Westermark

Maintainer: Paul F. Thaben <paul.thaben at charite.de>

Citation (from within R, enter citation("rain")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rain")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rain")
Rain Usage PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Genetics, Microarray, MultipleComparison, Proteomics, Software, SystemsBiology, TimeCourse
Version 1.36.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-2
Depends R (>= 2.10), gmp, multtest
Imports
System Requirements
URL
See More
Suggests lattice, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rain_1.36.0.tar.gz
Windows Binary rain_1.36.0.zip
macOS Binary (x86_64) rain_1.36.0.tgz
macOS Binary (arm64) rain_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rain
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rain
Bioc Package Browser https://code.bioconductor.org/browse/rain/
Package Short Url https://bioconductor.org/packages/rain/
Package Downloads Report Download Stats