rawrr
Direct Access to Orbitrap Data and Beyond
Bioconductor version: Release (3.19)
This package wraps the functionality of the RawFileReader .NET assembly. Within the R environment, spectra and chromatograms are represented by S3 objects. The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland.
Author: Christian Panse [aut, cre] , Tobias Kockmann [aut]
Maintainer: Christian Panse <cp at fgcz.ethz.ch>
citation("rawrr")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rawrr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rawrr")
Direct Access to Orbitrap Data and Beyond | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
INSTALL | Text |
Details
biocViews | Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
Version | 1.12.0 |
In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
License | GPL-3 |
Depends | R (>= 4.1) |
Imports | grDevices, graphics, stats, utils |
System Requirements | mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows. |
URL | https://github.com/fgcz/rawrr/ |
Bug Reports | https://github.com/fgcz/rawrr/issues |
See More
Suggests | BiocStyle(>= 2.5), ExperimentHub, knitr, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | MsBackendRawFileReader, rawDiag |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | rawrr_1.12.0.tar.gz |
Windows Binary | rawrr_1.12.0.zip |
macOS Binary (x86_64) | rawrr_1.12.0.tgz |
macOS Binary (arm64) | rawrr_1.12.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/rawrr |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rawrr |
Bioc Package Browser | https://code.bioconductor.org/browse/rawrr/ |
Package Short Url | https://bioconductor.org/packages/rawrr/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.19 | Source Archive |