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rebook

Re-using Content in Bioconductor Books


Bioconductor version: Release (3.18)

Provides utilities to re-use content across chapters of a Bioconductor book. This is mostly based on functionality developed while writing the OSCA book, but generalized for potential use in other large books with heavy compute. Also contains some functions to assist book deployment.

Author: Aaron Lun [aut, cre, cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("rebook")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rebook")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rebook")
Reusing book content HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, ReportWriting, Software
Version 1.12.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3
Depends
Imports utils, methods, knitr (>= 1.32), rmarkdown, CodeDepends, dir.expiry, filelock, BiocStyle
System Requirements
URL
See More
Suggests testthat, igraph, XML, BiocManager, RCurl, bookdown, rappdirs, yaml, BiocParallel, OSCA.intro, OSCA.workflows
Linking To
Enhances
Depends On Me csawBook, OSCA, OSCA.advanced, OSCA.basic, OSCA.intro, OSCA.multisample, OSCA.workflows, SingleRBook
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rebook_1.12.0.tar.gz
Windows Binary rebook_1.12.0.zip
macOS Binary (x86_64) rebook_1.12.0.tgz
macOS Binary (arm64) rebook_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rebook
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rebook
Bioc Package Browser https://code.bioconductor.org/browse/rebook/
Package Short Url https://bioconductor.org/packages/rebook/
Package Downloads Report Download Stats