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An R interface to the Rfam database

Bioconductor version: Release (3.18)

rfaRm provides a client interface to the Rfam database of RNA families. Data that can be retrieved include RNA families, secondary structure images, covariance models, sequences within each family, alignments leading to the identification of a family and secondary structures in the dot-bracket format.

Author: Lara Selles Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro

Maintainer: Lara Selles Vidal <lara.selles at oist.jp>, Rafael Ayala <rafael.ayala at oist.jp>

Citation (from within R, enter citation("rfaRm")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

rfaRm HTML R Script
Reference Manual PDF


biocViews DataImport, FunctionalGenomics, MultipleSequenceAlignment, Software, ThirdPartyClient, Visualization
Version 1.14.2
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License GPL-3
Imports httr, stringi, rsvg, magick, data.table, Biostrings, utils, rvest, xml2, IRanges, S4Vectors, jsonlite
System Requirements
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Suggests R4RNA, treeio, knitr, BiocStyle, rmarkdown, BiocGenerics, RUnit
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rfaRm_1.14.2.tar.gz
Windows Binary rfaRm_1.14.2.zip
macOS Binary (x86_64) rfaRm_1.14.2.tgz
macOS Binary (arm64) rfaRm_1.14.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/rfaRm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rfaRm
Bioc Package Browser https://code.bioconductor.org/browse/rfaRm/
Package Short Url https://bioconductor.org/packages/rfaRm/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive