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rhdf5filters

HDF5 Compression Filters


Bioconductor version: Release (3.18)

Provides a collection of additional compression filters for HDF5 datasets. The package is intended to provide seemless integration with rhdf5, however the compiled filters can also be used with external applications.

Author: Mike Smith [aut, cre]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("rhdf5filters")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rhdf5filters")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rhdf5filters")
HDF5 Compression Filters HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, Infrastructure, Software
Version 1.14.1
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License BSD_2_clause + file LICENSE
Depends
Imports
System Requirements GNU make
URL https://github.com/grimbough/rhdf5filters
Bug Reports https://github.com/grimbough/rhdf5filters
See More
Suggests BiocStyle, knitr, rmarkdown, tinytest, rhdf5(>= 2.34.0)
Linking To Rhdf5lib
Enhances
Depends On Me
Imports Me HDF5Array, rhdf5
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rhdf5filters_1.14.1.tar.gz
Windows Binary rhdf5filters_1.14.1.zip
macOS Binary (x86_64) rhdf5filters_1.14.1.tgz
macOS Binary (arm64) rhdf5filters_1.14.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/rhdf5filters
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rhdf5filters
Bioc Package Browser https://code.bioconductor.org/browse/rhdf5filters/
Package Short Url https://bioconductor.org/packages/rhdf5filters/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive