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sangerseqR

Tools for Sanger Sequencing Data in R


Bioconductor version: Release (3.18)

This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.

Author: Jonathon T. Hill, Bradley Demarest

Maintainer: Jonathon Hill <jhill at byu.edu>

Citation (from within R, enter citation("sangerseqR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sangerseqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sangerseqR")
Using the sangerseqR package HTML R Script
Reference Manual PDF

Details

biocViews SNP, Sequencing, Software, Visualization
Version 1.38.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL-2
Depends R (>= 3.5.0), Biostrings, stringr
Imports methods, shiny
System Requirements
URL
See More
Suggests BiocStyle, knitr, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me sangeranalyseR
Imports Me scifer
Suggests Me CrispRVariants
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sangerseqR_1.38.0.tar.gz
Windows Binary sangerseqR_1.38.0.zip
macOS Binary (x86_64) sangerseqR_1.38.0.tgz
macOS Binary (arm64) sangerseqR_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sangerseqR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sangerseqR
Bioc Package Browser https://code.bioconductor.org/browse/sangerseqR/
Package Short Url https://bioconductor.org/packages/sangerseqR/
Package Downloads Report Download Stats