Welcome to the new bioconductor.org!


scReClassify: post hoc cell type classification of single-cell RNA-seq data

Bioconductor version: Release (3.18)

A post hoc cell type classification tool to fine-tune cell type annotations generated by any cell type classification procedure with semi-supervised learning algorithm AdaSampling technique. The current version of scReClassify supports Support Vector Machine and Random Forest as a base classifier.

Author: Pengyi Yang [aut] , Taiyun Kim [aut, cre]

Maintainer: Taiyun Kim <taiyun.kim91 at gmail.com>

Citation (from within R, enter citation("scReClassify")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

An introduction to scReClassify package HTML R Script
Reference Manual PDF


biocViews Classification, SingleCell, Software, SupportVectorMachine, Transcriptomics
Version 1.8.0
In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)
License GPL-3 + file LICENSE
Depends R (>= 4.1)
Imports randomForest, e1071, stats, SummarizedExperiment, SingleCellExperiment, methods
System Requirements
URL https://github.com/SydneyBioX/scReClassify http://www.bioconductor.org/packages/release/bioc/html/scReClassify.html
Bug Reports https://github.com/SydneyBioX/scReClassify/issues
See More
Suggests testthat, knitr, BiocStyle, rmarkdown, DT, mclust, dplyr
Linking To
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scReClassify_1.8.0.tar.gz
Windows Binary scReClassify_1.8.0.zip (64-bit only)
macOS Binary (x86_64) scReClassify_1.8.0.tgz
macOS Binary (arm64) scReClassify_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/scReClassify
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scReClassify
Bioc Package Browser https://code.bioconductor.org/browse/scReClassify/
Package Short Url https://bioconductor.org/packages/scReClassify/
Package Downloads Report Download Stats