Welcome to the new bioconductor.org!


Switch-like differential expression across single-cell trajectories

Bioconductor version: Release (3.18)

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Author: Kieran Campbell [aut, cre]

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("switchde")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

An overview of the switchde package HTML R Script
Reference Manual PDF


biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Regression, SingleCell, Software, Transcriptomics
Version 1.28.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL (>= 2)
Depends R (>= 3.4), SingleCellExperiment
Imports SummarizedExperiment, dplyr, ggplot2, methods, stats
System Requirements
URL https://github.com/kieranrcampbell/switchde
Bug Reports https://github.com/kieranrcampbell/switchde
See More
Suggests knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr
Linking To
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package switchde_1.28.0.tar.gz
Windows Binary switchde_1.28.0.zip
macOS Binary (x86_64) switchde_1.28.0.tgz
macOS Binary (arm64) switchde_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/switchde
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/switchde
Bioc Package Browser https://code.bioconductor.org/browse/switchde/
Package Short Url https://bioconductor.org/packages/switchde/
Package Downloads Report Download Stats