switchde
Switch-like differential expression across single-cell trajectories
Bioconductor version: Release (3.19)
Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.
Author: Kieran Campbell [aut, cre]
Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>
Citation (from within R, enter
citation("switchde")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("switchde")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("switchde")
An overview of the switchde package | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Regression, SingleCell, Software, Transcriptomics |
Version | 1.30.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
License | GPL (>= 2) |
Depends | R (>= 3.4), SingleCellExperiment |
Imports | SummarizedExperiment, dplyr, ggplot2, methods, stats |
System Requirements | |
URL | https://github.com/kieranrcampbell/switchde |
Bug Reports | https://github.com/kieranrcampbell/switchde |
See More
Suggests | knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | switchde_1.30.0.tar.gz |
Windows Binary | switchde_1.30.0.zip |
macOS Binary (x86_64) | switchde_1.30.0.tgz |
macOS Binary (arm64) | switchde_1.30.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/switchde |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/switchde |
Bioc Package Browser | https://code.bioconductor.org/browse/switchde/ |
Package Short Url | https://bioconductor.org/packages/switchde/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.19 | Source Archive |