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AnnotationData for Synaptome.DB package

Bioconductor version: Release (3.19)

The package provides access to the copy of the Synaptic proteome database. It was designed as an accompaniment for Synaptome.DB package. Database provides information for specific synaptic genes and allows building the protein-protein interaction graph for gene sets, synaptic compartments, and brain regions. In the current update we added 6 more synaptic proteome studies, which resulted in total of 64 studies. We introduced Synaptic Vesicle as a separate compartment. We also added coding mutations for Autistic Spectral disorder and Epilepsy collected from publicly available databases.

Author: Anatoly Sorokin [aut], Oksana Sorokina [aut, cre], J. Douglas Armstrong [aut]

Maintainer: Oksana Sorokina <oksana.sorokina at>

Citation (from within R, enter citation("")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

data_vignette HTML R Script
Reference Manual PDF


biocViews AnnotationData, AnnotationHub, CustomDBSchema, FunctionalAnnotation
Version 0.99.6
License Artistic-2.0
Depends R (>= 3.5.0), AnnotationHub
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Suggests BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo
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Depends On Me synaptome.db
Imports Me
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Follow Installation instructions to use this package in your R session.

Source Package synaptome.data_0.99.6.tar.gz
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