BioImageDbs
Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub)
Bioconductor version: Release (3.19)
The package provides a bioimage dataset for the image analysis using machine learning and deep learning. The dataset includes microscopy imaging data with supervised labels. The data is provided as R list data that can be loaded to Keras/tensorflow in R.
Author: Satoshi Kume [aut, cre] , Kozo Nishida [aut]
Maintainer: Satoshi Kume <satoshi.kume.1984 at gmail.com>
citation("BioImageDbs")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BioImageDbs")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BioImageDbs")
Providing Bioimage Dataset for ExperimentHub | HTML | R Script |
The BioImageBbs Datasets | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | CellCulture, ExperimentData, ExperimentHub, Tissue |
Version | 1.12.0 |
License | Artistic-2.0 |
Depends | R (>= 4.1.0) |
Imports | ExperimentHub, AnnotationHub, markdown, rmarkdown, EBImage, magick, magrittr, filesstrings, animation, einsum |
System Requirements | |
URL | https://kumes.github.io/BioImageDbs/ |
See More
Suggests | knitr, BiocStyle, purrr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | BioImageDbs_1.12.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/BioImageDbs |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BioImageDbs |
Package Short Url | https://bioconductor.org/packages/BioImageDbs/ |
Package Downloads Report | Download Stats |