ChIPexoQualExample
Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data
Bioconductor version: Release (3.19)
Data for the ChIPexoQual package, consisting of (3) chromosome 1 aligned reads from a ChIP-exo experiment for FoxA1 in mouse liver cell lines aligned to the mm9 genome.
Author: Rene Welch, Dongjun Chung, Sunduz Keles
Maintainer: Rene Welch <welch at stat.wisc.edu>
Citation (from within R, enter
citation("ChIPexoQualExample")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChIPexoQualExample")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChIPexoQualExample")
ChIPexoQualExample | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ExperimentData, Genome |
Version | 1.28.0 |
License | GPL (>= 2) |
Depends | R (>= 3.3) |
Imports | |
System Requirements | |
URL | http://www.github.com/keleslab/ChIPexoQualExample |
See More
Suggests | BiocStyle, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | ChIPexoQual |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ChIPexoQualExample_1.28.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/ChIPexoQualExample |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ChIPexoQualExample |
Package Short Url | https://bioconductor.org/packages/ChIPexoQualExample/ |
Package Downloads Report | Download Stats |