GSE159526
Placental cell DNA methylation data from GEO accession GSE159526
Bioconductor version: Release (3.19)
19 term and 9 first trimester placental chorionic villi and matched cell-sorted samples ran on Illumina HumanMethylationEPIC DNA methylation microarrays. This data was made available on GEO accession [GSE159526](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159526). Both the raw and processed data has been made available on \code{ExperimentHub}. Raw unprocessed data formatted as an RGChannelSet object for integration and normalization using minfi and other existing Bioconductor packages. Processed normalized data is also available as a DNA methylation \code{matrix}, with a corresponding phenotype information as a \code{data.frame} object.
Author: Victor Yuan [aut, cre]
Maintainer: Victor Yuan <victor.2wy at gmail.com>
citation("GSE159526")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GSE159526")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSE159526")
Introduction to GSE159526 | HTML | R Script |
Reference Manual | ||
LICENSE | Text |
Details
biocViews | ExperimentData, ExperimentHub, GEO, Genome, Homo_sapiens_Data, MethylationArrayData, Tissue |
Version | 1.10.0 |
License | MIT + file LICENSE |
Depends | |
Imports | |
System Requirements | |
URL | https://github.com/wvictor14/GSE159526 |
Bug Reports | https://github.com/wvictor14/GSE159526/issues |
See More
Suggests | ExperimentHub, BiocStyle, RefManageR, knitr, rmarkdown, testthat, minfi, tibble, sessioninfo |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GSE159526_1.10.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/GSE159526 |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSE159526 |
Package Short Url | https://bioconductor.org/packages/GSE159526/ |
Package Downloads Report | Download Stats |