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GeuvadisTranscriptExpr

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project


Bioconductor version: Release (3.18)

Provides transcript expression and bi-allelic genotypes corresponding to the chromosome 19 for CEU individuals from the GEUVADIS project, Lappalainen et al.

Author: Malgorzata Nowicka [aut, cre]

Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>

Citation (from within R, enter citation("GeuvadisTranscriptExpr")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeuvadisTranscriptExpr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeuvadisTranscriptExpr")
Preprocessing and preparation of transcript expression and genotypes from the GEUVADIS project for sQTL analysis PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExpressionData, Genome, Homo_sapiens_Data, RNASeqData, SNPData, SequencingData
Version 1.30.0
License GPL (>= 3)
Depends R (>= 3.5.0)
Imports
System Requirements
URL
See More
Suggests limma, rtracklayer, GenomicRanges, Rsamtools, VariantAnnotation, tools, BiocStyle, knitr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me DRIMSeq
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeuvadisTranscriptExpr_1.30.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/GeuvadisTranscriptExpr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeuvadisTranscriptExpr
Package Short Url https://bioconductor.org/packages/GeuvadisTranscriptExpr/
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