bodymapRat
Experimental dataset from the rat BodyMap project
Bioconductor version: Release (3.19)
This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.
Author: Stephanie Hicks [aut, cre] , Kwame Okrah [aut]
Maintainer: Stephanie Hicks <shicks19 at jhu.edu>
citation("bodymapRat")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bodymapRat")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bodymapRat")
The bodymapRat data user's guide | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData |
Version | 1.20.0 |
License | CC BY 4.0 |
Depends | R (>= 3.6.0), SummarizedExperiment, ExperimentHub |
Imports | utils |
System Requirements | |
URL |
See More
Suggests | rmarkdown, knitr, BiocStyle, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | qsmooth |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | bodymapRat_1.20.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/bodymapRat |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bodymapRat |
Package Short Url | https://bioconductor.org/packages/bodymapRat/ |
Package Downloads Report | Download Stats |