chipseqDBData

DOI: 10.18129/B9.bioc.chipseqDBData    

Data for the chipseqDB Workflow

Bioconductor version: Release (3.9)

Sorted and indexed BAM files for ChIP-seq libraries, for use in the chipseqDB workflow. BAM indices are also included.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("chipseqDBData")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chipseqDBData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chipseqDBData")

 

HTML R Script File manifest and statistics
PDF   Reference Manual

Details

biocViews ChIPSeqData, ExperimentData, ExperimentHub, SequencingData
Version 1.0.0
License CC BY 4.0
Depends
Imports AnnotationHub, ExperimentHub, S4Vectors
LinkingTo
Suggests knitr, BiocStyle, Rsamtools
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me chipseqDB, csawUsersGuide
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chipseqDBData_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/chipseqDBData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/chipseqDBData
Package Short Url https://bioconductor.org/packages/chipseqDBData/
Package Downloads Report Download Stats

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