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curatedBreastData

Curated breast cancer gene expression data with survival and treatment information


Bioconductor version: Release (3.18)

Curated human breast cancer tissue S4 ExpresionSet datasets from over 16 clinical trials comprising over 2,000 patients. All datasets contain at least one type of outcomes variable and treatment information (minimum level: whether they had chemotherapy and whether they had hormonal therapy). Includes code to post-process these datasets.

Author: Katie Planey

Maintainer: Katie Planey <katie.planey at gmail.com>

Citation (from within R, enter citation("curatedBreastData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("curatedBreastData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedBreastData")
Manual PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews BreastCancerData, CancerData, ExperimentData, ExpressionData, GEO, MicroarrayData, Tissue, TissueMicroarrayData, qPCRData
Version 2.30.0
License GPL (>= 2)
Depends R (>= 3.0.0), XML, ggplot2, impute, Biobase, BiocStyle
Imports methods, stats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedBreastData_2.30.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/curatedBreastData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/curatedBreastData
Package Short Url https://bioconductor.org/packages/curatedBreastData/
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