easierData
easier internal data and exemplary dataset from IMvigor210CoreBiologies package
Bioconductor version: Release (3.19)
Access to internal data required for the functional performance of easier package and exemplary bladder cancer dataset with both processed RNA-seq data and information on response to ICB therapy generated by Mariathasan et al. "TGF-B attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells", published in Nature, 2018 [doi:10.1038/nature25501](https://doi.org/10.1038/nature25501). The data is made available via [`IMvigor210CoreBiologies`](http://research-pub.gene.com/IMvigor210CoreBiologies/) package under the CC-BY license.
Author: Oscar Lapuente-Santana [aut, cre] , Federico Marini [aut] , Arsenij Ustjanzew [aut] , Francesca Finotello [aut] , Federica Eduati [aut]
Maintainer: Oscar Lapuente-Santana <o.lapuente.santana at tue.nl>
citation("easierData")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("easierData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("easierData")
easier data | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | CancerData, ExperimentData, ExperimentHub, ImmunoOncologyData, RNASeqData, ReproducibleResearch |
Version | 1.10.0 |
License | MIT + file LICENSE |
Depends | R (>= 4.1.0) |
Imports | ExperimentHub, AnnotationHub, utils, SummarizedExperiment |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0) |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | easier |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | easierData_1.10.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/easierData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/easierData |
Package Short Url | https://bioconductor.org/packages/easierData/ |
Package Downloads Report | Download Stats |