DOI: 10.18129/B9.bioc.Category    

This is the development version of Category; for the stable release version, see Category.

Category Analysis

Bioconductor version: Development (3.7)

A collection of tools for performing category (gene set enrichment) analysis.

Author: Robert Gentleman [aut], Seth Falcon [ctb], Deepayan Sarkar [ctb], Robert Castelo [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at>

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PDF R Script Using Categories to Analyze Microarray Data
PDF R Script Using Chromosome Bands as Categories
PDF   Reference Manual
Text   NEWS


biocViews Annotation, GO, GeneSetEnrichment, Pathways, Software
Version 2.45.2
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 13 years)
License Artistic-2.0
Depends methods, stats4, BiocGenerics, AnnotationDbi, Biobase, Matrix
Imports utils, stats, graph, RBGL, GSEABase, genefilter, annotate, DBI
Suggests EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGG.db, SNPchip, geneplotter, limma, lattice, RUnit, org.Sc.sgd.db, GOstats, GO.db
Depends On Me GOstats, meshr, PCpheno
Imports Me categoryCompare, cellHTS2, eisa, gCMAP, interactiveDisplay, MAGeCKFlute, PCpheno, phenoTest, ppiStats, RDAVIDWebService, ReportingTools
Suggests Me BiocCaseStudies, GSEAlm, miRLAB, MmPalateMiRNA, qpgraph, RnBeads
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