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iSEEu

This is the development version of iSEEu; for the stable release version, see iSEEu.

iSEE Universe


Bioconductor version: Development (3.19)

iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.

Author: Kevin Rue-Albrecht [aut, cre] , Charlotte Soneson [aut] , Federico Marini [aut] , Aaron Lun [aut] , Michael Stadler [ctb]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Citation (from within R, enter citation("iSEEu")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iSEEu")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEu")
Panel universe HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization
Version 1.15.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License MIT + file LICENSE
Depends iSEE, iSEEhex
Imports methods, S4Vectors, IRanges, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2 (>= 3.4.0), DT, stats, colourpicker, shinyAce
System Requirements
URL https://github.com/iSEE/iSEEu
Bug Reports https://github.com/iSEE/iSEEu/issues
See More
Suggests scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSEEu_1.15.0.tar.gz
Windows Binary iSEEu_1.15.0.zip
macOS Binary (x86_64) iSEEu_1.15.0.tgz
macOS Binary (arm64) iSEEu_1.15.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iSEEu
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iSEEu
Bioc Package Browser https://code.bioconductor.org/browse/iSEEu/
Package Short Url https://bioconductor.org/packages/iSEEu/
Package Downloads Report Download Stats