BiocHubsShiny
This is the development version of BiocHubsShiny; for the stable release version, see BiocHubsShiny.
View AnnotationHub and ExperimentHub Resources Interactively
Bioconductor version: Development (3.21)
A package that allows interactive exploration of AnnotationHub and ExperimentHub resources. It uses DT / DataTable to display resources for multiple organisms. It provides template code for reproducibility and for downloading resources via the indicated Hub package.
Author: Marcel Ramos [aut, cre] (ORCID:
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
citation("BiocHubsShiny")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BiocHubsShiny")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocHubsShiny")| BiocHubsShiny Overview | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ShinyApps, Software |
| Version | 1.7.2 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.3.0), shiny |
| Imports | AnnotationHub, ExperimentHub, DT, htmlwidgets, rclipboard, S4Vectors, shinyAce, shinyjs, shinythemes, shinytoastr, utils |
| System Requirements | |
| URL | https://github.com/Bioconductor/BiocHubsShiny |
| Bug Reports | https://github.com/Bioconductor/BiocHubsShiny/issues |
See More
| Suggests | BiocManager, BiocStyle, knitr, rmarkdown, sessioninfo, shinytest2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BiocHubsShiny_1.7.2.tar.gz |
| Windows Binary (x86_64) | BiocHubsShiny_1.7.2.zip |
| macOS Binary (x86_64) | BiocHubsShiny_1.7.2.tgz |
| macOS Binary (arm64) | BiocHubsShiny_1.7.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BiocHubsShiny |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocHubsShiny |
| Bioc Package Browser | https://code.bioconductor.org/browse/BiocHubsShiny/ |
| Package Short Url | https://bioconductor.org/packages/BiocHubsShiny/ |
| Package Downloads Report | Download Stats |