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BiocHubsShiny

View AnnotationHub and ExperimentHub Resources Interactively


Bioconductor version: Release (3.18)

A package that allows interactive exploration of AnnotationHub and ExperimentHub resources. It uses DT / DataTable to display resources for multiple organisms. It provides template code for reproducibility and for downloading resources via the indicated Hub package.

Author: Marcel Ramos [aut, cre] , Vincent Carey [ctb]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("BiocHubsShiny")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocHubsShiny")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocHubsShiny")
BiocHubsShiny Overview HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ShinyApps, Software
Version 1.2.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License Artistic-2.0
Depends R (>= 4.3.0), shiny
Imports AnnotationHub, ExperimentHub, DT, htmlwidgets, S4Vectors, shinyAce, shinyjs, shinythemes, shinytoastr, utils
System Requirements
URL https://github.com/Bioconductor/BiocHubsShiny
Bug Reports https://github.com/Bioconductor/BiocHubsShiny/issues
See More
Suggests BiocManager, BiocStyle, knitr, rmarkdown, sessioninfo, shinytest2
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocHubsShiny_1.2.0.tar.gz
Windows Binary BiocHubsShiny_1.2.0.zip
macOS Binary (x86_64) BiocHubsShiny_1.2.0.tgz
macOS Binary (arm64) BiocHubsShiny_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocHubsShiny
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocHubsShiny
Bioc Package Browser https://code.bioconductor.org/browse/BiocHubsShiny/
Package Short Url https://bioconductor.org/packages/BiocHubsShiny/
Package Downloads Report Download Stats