RTNduals

This is the development version of RTNduals; for the stable release version, see RTNduals.

Analysis of co-regulation and inference of 'dual regulons'

Bioconductor version: Development (3.19)

RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulators can co-operate or compete in influencing targets.

Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>, Clarice Groeneveld <clari.groeneveld at gmail.com>

Citation (from within R, enter citation("RTNduals")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RTNduals")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneExpression, GeneRegulation, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software
Version	1.27.0
In Bioconductor since	BioC 3.5 (R-3.4) (7 years)
License	Artistic-2.0
Depends	R (>= 3.6.3), RTN(>= 2.14.1), methods
Imports	graphics, grDevices, stats, utils
System Requirements
URL

Suggests	knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me	RTNsurvival
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/RTNduals
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RTNduals
Package Short Url	https://bioconductor.org/packages/RTNduals/
Package Downloads Report	Download Stats