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SimBindProfiles

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of SimBindProfiles; for the stable release version, see SimBindProfiles.

Similar Binding Profiles


Bioconductor version: Development (3.19)

SimBindProfiles identifies common and unique binding regions in genome tiling array data. This package does not rely on peak calling, but directly compares binding profiles processed on the same array platform. It implements a simple threshold approach, thus allowing retrieval of commonly and differentially bound regions between datasets as well as events of compensation and increased binding.

Author: Bettina Fischer, Enrico Ferrero, Robert Stojnic, Steve Russell

Maintainer: Bettina Fischer <bef22 at cam.ac.uk>

Citation (from within R, enter citation("SimBindProfiles")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SimBindProfiles")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Microarray, Software
Version 1.41.1
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-3
Depends R (>= 2.10), methods, Ringo
Imports limma, mclust, Biobase
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/SimBindProfiles
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SimBindProfiles
Package Short Url https://bioconductor.org/packages/SimBindProfiles/
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