XVector
This is the development version of XVector; for the stable release version, see XVector.
Foundation of external vector representation and manipulation in Bioconductor
Bioconductor version: Development (3.20)
Provides memory efficient S4 classes for storing sequences "externally" (e.g. behind an R external pointer, or on disk).
Author: Hervé Pagès and Patrick Aboyoun
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
Citation (from within R, enter
citation("XVector")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("XVector")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | DataRepresentation, Infrastructure, Software |
Version | 0.45.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
License | Artistic-2.0 |
Depends | R (>= 4.0.0), methods, BiocGenerics(>= 0.37.0), S4Vectors(>= 0.27.12), IRanges(>= 2.23.9) |
Imports | methods, utils, tools, zlibbioc, BiocGenerics, S4Vectors, IRanges |
System Requirements | |
URL | https://bioconductor.org/packages/XVector |
Bug Reports | https://github.com/Bioconductor/XVector/issues |
See More
Suggests | Biostrings, drosophila2probe, RUnit |
Linking To | S4Vectors, IRanges |
Enhances | |
Depends On Me | Biostrings, triplex |
Imports Me | BSgenome, ChIPsim, CNEr, compEpiTools, crisprScore, dada2, DECIPHER, gcrma, GenomAutomorphism, GenomicFeatures, GenomicRanges, Gviz, HiLDA, IONiseR, IsoformSwitchAnalyzeR, kebabs, MatrixRider, Modstrings, monaLisa, ProteoDisco, R453Plus1Toolbox, ribosomeProfilingQC, Rsamtools, rtracklayer, SparseArray, Structstrings, TFBSTools, tracktables, tRNA, tRNAscanImport, VariantAnnotation, simMP |
Suggests Me | IRanges, musicatk |
Links To Me | Biostrings, CNEr, DECIPHER, kebabs, MatrixRider, pwalign, Rsamtools, rtracklayer, ShortRead, SparseArray, triplex, VariantAnnotation, VariantFiltering |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | XVector_0.45.0.tar.gz |
Windows Binary | XVector_0.45.0.zip |
macOS Binary (x86_64) | XVector_0.45.0.tgz |
macOS Binary (arm64) | XVector_0.45.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/XVector |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/XVector |
Bioc Package Browser | https://code.bioconductor.org/browse/XVector/ |
Package Short Url | https://bioconductor.org/packages/XVector/ |
Package Downloads Report | Download Stats |