compEpiTools
This is the development version of compEpiTools; for the stable release version, see compEpiTools.
Tools for computational epigenomics
Bioconductor version: Development (3.20)
Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.
Author: Mattia Pelizzola [aut], Kamal Kishore [aut], Mattia Furlan [ctb, cre]
Maintainer: Mattia Furlan <mattia.furlan at iit.it>
citation("compEpiTools")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("compEpiTools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("compEpiTools")
compEpiTools.pdf | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization |
Version | 1.39.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
License | GPL |
Depends | R (>= 3.5.0), methods, topGO, GenomicRanges |
Imports | AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, GenomeInfoDb |
System Requirements | |
URL |
See More
Suggests | BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, knitr, rtracklayer |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | compEpiTools_1.39.0.tar.gz |
Windows Binary | compEpiTools_1.39.0.zip |
macOS Binary (x86_64) | compEpiTools_1.39.0.tgz |
macOS Binary (arm64) | compEpiTools_1.39.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/compEpiTools |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/compEpiTools |
Bioc Package Browser | https://code.bioconductor.org/browse/compEpiTools/ |
Package Short Url | https://bioconductor.org/packages/compEpiTools/ |
Package Downloads Report | Download Stats |