compEpiTools
This is the development version of compEpiTools; for the stable release version, see compEpiTools.
Tools for computational epigenomics
Bioconductor version: Development (3.21)
Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.
Author: Mattia Pelizzola [aut], Kamal Kishore [aut], Mattia Furlan [ctb, cre]
Maintainer: Mattia Furlan <mattia.furlan at iit.it>
citation("compEpiTools")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("compEpiTools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("compEpiTools")| compEpiTools.pdf | R Script | |
| Reference Manual |
Details
| biocViews | Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization |
| Version | 1.41.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
| License | GPL |
| Depends | R (>= 3.5.0), methods, topGO, GenomicRanges |
| Imports | AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, GenomeInfoDb |
| System Requirements | |
| URL |
See More
| Suggests | BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, knitr, rtracklayer |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | compEpiTools_1.41.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/compEpiTools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/compEpiTools |
| Bioc Package Browser | https://code.bioconductor.org/browse/compEpiTools/ |
| Package Short Url | https://bioconductor.org/packages/compEpiTools/ |
| Package Downloads Report | Download Stats |