Welcome to the new bioconductor.org!

alabaster.spatial

This is the development version of alabaster.spatial; for the stable release version, see alabaster.spatial.

Save and Load Spatial 'Omics Data to/from File


Bioconductor version: Development (3.19)

Save SpatialExperiment objects and their images into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("alabaster.spatial")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("alabaster.spatial")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.spatial")
Saving spatial experiments HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews DataImport, DataRepresentation, Software
Version 1.3.1
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License MIT + file LICENSE
Depends SpatialExperiment, alabaster.base
Imports methods, utils, grDevices, S4Vectors, alabaster.sce, rhdf5
System Requirements
URL
See More
Suggests testthat, knitr, rmarkdown, BiocStyle, DropletUtils, magick, png, digest
Linking To
Enhances
Depends On Me
Imports Me alabaster
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alabaster.spatial_1.3.1.tar.gz
Windows Binary alabaster.spatial_1.3.1.zip
macOS Binary (x86_64) alabaster.spatial_1.3.1.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/alabaster.spatial
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/alabaster.spatial
Bioc Package Browser https://code.bioconductor.org/browse/alabaster.spatial/
Package Short Url https://bioconductor.org/packages/alabaster.spatial/
Package Downloads Report Download Stats