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This is the development version of brainflowprobes; for the stable release version, see brainflowprobes.

Plots and annotation for choosing BrainFlow target probe sequence

Bioconductor version: Development (3.19)

Use these functions to characterize genomic regions for BrainFlow target probe design.

Author: Amanda Price [aut, cre] , Leonardo Collado-Torres [ctb]

Maintainer: Amanda Price <amanda.joy.price at gmail.com>

Citation (from within R, enter citation("brainflowprobes")):


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if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

brainflowprobes users guide HTML R Script
Reference Manual PDF


biocViews Coverage, ExperimentalDesign, FlowCytometry, GeneTarget, Software, Transcriptomics, Visualization
Version 1.17.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License Artistic-2.0
Depends R (>= 3.6.0)
Imports Biostrings(>= 2.52.0), BSgenome.Hsapiens.UCSC.hg19(>= 1.4.0), bumphunter(>= 1.26.0), cowplot (>= 1.0.0), derfinder(>= 1.18.1), derfinderPlot(>= 1.18.1), GenomicRanges(>= 1.36.0), ggplot2 (>= 3.1.1), RColorBrewer (>= 1.1), utils, grDevices, GenomicState(>= 0.99.7)
System Requirements
URL https://github.com/LieberInstitute/brainflowprobes
Bug Reports https://support.bioconductor.org/t/brainflowprobes
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Suggests BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 2.1.0), covr
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Follow Installation instructions to use this package in your R session.

Source Package brainflowprobes_1.17.0.tar.gz
Windows Binary brainflowprobes_1.17.0.zip
macOS Binary (x86_64) brainflowprobes_1.17.0.tgz
macOS Binary (arm64) brainflowprobes_1.17.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/brainflowprobes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/brainflowprobes
Bioc Package Browser https://code.bioconductor.org/browse/brainflowprobes/
Package Short Url https://bioconductor.org/packages/brainflowprobes/
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