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cleaver

This is the development version of cleaver; for the stable release version, see cleaver.

Cleavage of Polypeptide Sequences


Bioconductor version: Development (3.20)

In-silico cleavage of polypeptide sequences. The cleavage rules are taken from: http://web.expasy.org/peptide_cutter/peptidecutter_enzymes.html

Author: Sebastian Gibb [aut, cre]

Maintainer: Sebastian Gibb <mail at sebastiangibb.de>

Citation (from within R, enter citation("cleaver")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cleaver")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cleaver")
In-silico cleavage of polypeptides HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Proteomics, Software
Version 1.43.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL (>= 3)
Depends R (>= 3.0.0), methods, Biostrings(>= 1.29.8)
Imports S4Vectors, IRanges
System Requirements
URL https://github.com/sgibb/cleaver/
Bug Reports https://github.com/sgibb/cleaver/issues/
See More
Suggests testthat (>= 0.8), knitr, BiocStyle(>= 0.0.14), rmarkdown, BRAIN, UniProt.ws(>= 2.36.5)
Linking To
Enhances
Depends On Me
Imports Me ProteoDisco, synapter
Suggests Me RforProteomics
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cleaver_1.43.0.tar.gz
Windows Binary cleaver_1.43.0.zip (64-bit only)
macOS Binary (x86_64) cleaver_1.43.0.tgz
macOS Binary (arm64) cleaver_1.43.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cleaver
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cleaver
Bioc Package Browser https://code.bioconductor.org/browse/cleaver/
Package Short Url https://bioconductor.org/packages/cleaver/
Package Downloads Report Download Stats