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flowTrans

This is the development version of flowTrans; for the stable release version, see flowTrans.

Parameter Optimization for Flow Cytometry Data Transformation


Bioconductor version: Development (3.19)

Profile maximum likelihood estimation of parameters for flow cytometry data transformations.

Author: Greg Finak <gfinak at fredhutch.org>, Juan Manuel-Perez <jperez at ircm.qc.ca>, Raphael Gottardo <rgottard at fredhutch.org>

Maintainer: Greg Finak <gfinak at fredhutch.org>

Citation (from within R, enter citation("flowTrans")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flowTrans")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowTrans")
flowTrans package PDF R Script
Reference Manual PDF

Details

biocViews FlowCytometry, ImmunoOncology, Software
Version 1.55.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License Artistic-2.0
Depends R (>= 2.11.0), flowCore, flowViz, flowClust
Imports flowCore, methods, flowViz, stats, flowClust
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowTrans_1.55.0.tar.gz
Windows Binary flowTrans_1.55.0.zip
macOS Binary (x86_64) flowTrans_1.55.0.tgz
macOS Binary (arm64) flowTrans_1.55.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowTrans
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowTrans
Bioc Package Browser https://code.bioconductor.org/browse/flowTrans/
Package Short Url https://bioconductor.org/packages/flowTrans/
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