flowCore
This is the development version of flowCore; for the stable release version, see flowCore.
flowCore: Basic structures for flow cytometry data
Bioconductor version: Development (3.20)
Provides S4 data structures and basic functions to deal with flow cytometry data.
Author: B Ellis [aut], Perry Haaland [aut], Florian Hahne [aut], Nolwenn Le Meur [aut], Nishant Gopalakrishnan [aut], Josef Spidlen [aut], Mike Jiang [aut, cre], Greg Finak [aut], Samuel Granjeaud [ctb]
Maintainer: Mike Jiang <mike at ozette.com>
citation("flowCore")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("flowCore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowCore")
Basic Functions for Flow Cytometry Data | R Script | |
fcs3.html | HTML | |
hyperlog.notice.html | HTML | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | CellBasedAssays, FlowCytometry, ImmunoOncology, Infrastructure, Software |
Version | 2.17.0 |
In Bioconductor since | BioC 2.0 (R-2.5) (17.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0) |
Imports | Biobase, BiocGenerics(>= 0.29.2), grDevices, graphics, methods, stats, utils, stats4, Rcpp, matrixStats, cytolib(>= 2.13.1), S4Vectors |
System Requirements | GNU make, C++11 |
URL |
See More
Suggests | Rgraphviz, flowViz, flowStats(>= 3.43.4), testthat, flowWorkspace, flowWorkspaceData, openCyto, knitr, ggcyto, gridExtra |
Linking To | cpp11, BH (>= 1.81.0.0), cytolib, RProtoBufLib |
Enhances | |
Depends On Me | flowBeads, flowBin, flowClean, flowCut, flowFP, flowMatch, flowTime, flowTrans, flowViz, flowVS, ggcyto, immunoClust, infinityFlow, ncdfFlow, HDCytoData, healthyFlowData, highthroughputassays |
Imports Me | CATALYST, cmapR, cyanoFilter, cydar, cytofQC, CytoMDS, cytoMEM, CytoML, CytoPipeline, CytoPipelineGUI, ddPCRclust, diffcyt, flowAI, flowBeads, flowCHIC, flowClust, flowDensity, flowGate, flowMeans, flowPloidy, FlowSOM, flowSpecs, flowStats, flowTrans, flowViz, flowWorkspace, GateFinder, MAPFX, MetaCyto, PeacoQC, scDataviz, scifer, Sconify, tidyFlowCore, tidytof |
Suggests Me | COMPASS, flowPeaks, flowPloidyData, hypergate, segmenTier |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | flowCore_2.17.0.tar.gz |
Windows Binary | flowCore_2.17.0.zip |
macOS Binary (x86_64) | flowCore_2.17.0.tgz |
macOS Binary (arm64) | flowCore_2.17.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/flowCore |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowCore |
Bioc Package Browser | https://code.bioconductor.org/browse/flowCore/ |
Package Short Url | https://bioconductor.org/packages/flowCore/ |
Package Downloads Report | Download Stats |