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planet

This is the development version of planet; for the stable release version, see planet.

Placental DNA methylation analysis tools


Bioconductor version: Development (3.19)

This package contains R functions to predict biological variables to from placnetal DNA methylation data generated from infinium arrays. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data.

Author: Victor Yuan [aut, cre], Wendy P. Robinson [ctb]

Maintainer: Victor Yuan <victor.2wy at gmail.com>

Citation (from within R, enter citation("planet")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("planet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("planet")
planet HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CpGIsland, DNAMethylation, DifferentialMethylation, Epigenetics, MethylationArray, Microarray, Software
Version 1.11.0
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License GPL-2
Depends R (>= 4.3)
Imports methods, tibble, magrittr, dplyr
System Requirements
URL https://victor.rbind.io/planet http://github.com/wvictor14/planet
Bug Reports http://github.com/wvictor14/planet/issues
See More
Suggests ggplot2, testthat, tidyr, scales, minfi, EpiDISH, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me methylclock
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package planet_1.11.0.tar.gz
Windows Binary planet_1.11.0.zip
macOS Binary (x86_64) planet_1.11.0.tgz
macOS Binary (arm64) planet_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/planet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/planet
Bioc Package Browser https://code.bioconductor.org/browse/planet/
Package Short Url https://bioconductor.org/packages/planet/
Package Downloads Report Download Stats