DOI: 10.18129/B9.bioc.HarmanData  

This is the development version of HarmanData; for the stable release version, see HarmanData.

Data for the Harman package

Bioconductor version: Development (3.19)

Datasets of accompany Harman, a PCA and constrained optimisation based technique. Contains three example datasets: IMR90, Human lung fibroblast cells exposed to nitric oxide; NPM, an experiment to test skin penetration of metal oxide nanoparticles following topical application of sunscreens in non-pregnant mice; OLF; an experiment to gauge the response of human olfactory neurosphere-derived (hONS) cells to ZnO nanoparticles. Since version 1.24, this package also contains the Infinium5 dataset, a set of batch correction adjustments across 5 Illumina Infinium Methylation BeadChip datasets. This file does not contain methylation data, but summary statistics of 5 datasets after correction. There is also an EpiSCOPE_sample file as exampling for the new methylation clustering functionality in Harman.

Author: Yalchin Oytam [aut], Josh Bowden [aut], Jason Ross [aut, cre]

Maintainer: Jason Ross <jason.ross at csiro.au>

Citation (from within R, enter citation("HarmanData")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script HarmanData
PDF   Reference Manual
Text   NEWS


biocViews ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, Mus_musculus_Data
Version 1.31.0
License GPL-3
Depends R (>= 3.5.0)
Suggests BiocGenerics, BiocStyle, knitr, rmarkdown, Harman(>= 1.23.3)
URL http://www.bioinformatics.csiro.au/harman/
Depends On Me
Imports Me
Suggests Me Harman
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HarmanData_1.31.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/HarmanData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HarmanData
Package Short Url https://bioconductor.org/packages/HarmanData/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: