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HarmanData

Data for the Harman package


Bioconductor version: Release (3.18)

Datasets of accompany Harman, a PCA and constrained optimisation based technique. Contains three example datasets: IMR90, Human lung fibroblast cells exposed to nitric oxide; NPM, an experiment to test skin penetration of metal oxide nanoparticles following topical application of sunscreens in non-pregnant mice; OLF; an experiment to gauge the response of human olfactory neurosphere-derived (hONS) cells to ZnO nanoparticles. Since version 1.24, this package also contains the Infinium5 dataset, a set of batch correction adjustments across 5 Illumina Infinium Methylation BeadChip datasets. This file does not contain methylation data, but summary statistics of 5 datasets after correction. There is also an EpiSCOPE_sample file as exampling for the new methylation clustering functionality in Harman.

Author: Yalchin Oytam [aut], Josh Bowden [aut], Jason Ross [aut, cre]

Maintainer: Jason Ross <jason.ross at csiro.au>

Citation (from within R, enter citation("HarmanData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HarmanData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HarmanData")
HarmanData HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, Mus_musculus_Data
Version 1.30.0
License GPL-3
Depends R (>= 3.5.0)
Imports
System Requirements
URL http://www.bioinformatics.csiro.au/harman/
See More
Suggests BiocGenerics, BiocStyle, knitr, rmarkdown, Harman(>= 1.23.3)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me Harman
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HarmanData_1.30.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/HarmanData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HarmanData
Package Short Url https://bioconductor.org/packages/HarmanData/
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