ComplexHeatmap

DOI: 10.18129/B9.bioc.ComplexHeatmap    

Make Complex Heatmaps

Bioconductor version: Release (3.10)

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("ComplexHeatmap")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ComplexHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComplexHeatmap")

 

HTML complex_heatmap.html
HTML R Script Most probably asked questions
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Sequencing, Software, Visualization
Version 2.2.0
In Bioconductor since BioC 3.1 (R-3.2) (4.5 years)
License MIT + file LICENSE
Depends R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Imports circlize (>= 0.4.5), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png
LinkingTo
Suggests testthat (>= 1.0.0), knitr, markdown, dendsort, Cairo, jpeg, tiff, fastcluster, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges
SystemRequirements
Enhances
URL https://github.com/jokergoo/ComplexHeatmap https://jokergoo.github.io/ComplexHeatmap-reference/book/
Depends On Me AMARETTO, EnrichedHeatmap, recoup
Imports Me artMS, BiocOncoTK, blacksheepr, CATALYST, COCOA, cola, DEComplexDisease, DEGreport, DEP, diffcyt, ELMER, EnrichmentBrowser, fCCAC, ImpulseDE2, LineagePulse, muscat, MWASTools, PathoStat, profileplyr, SEtools, singleCellTK, TCGAbiolinks, TCGAWorkflow, Xeva, YAPSA
Suggests Me ALPS, gtrellis, HilbertCurve, projectR, TCGAutils, TimeSeriesExperiment
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ComplexHeatmap_2.2.0.tar.gz
Windows Binary ComplexHeatmap_2.2.0.zip
Mac OS X 10.11 (El Capitan) ComplexHeatmap_2.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ComplexHeatmap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ComplexHeatmap
Package Short Url https://bioconductor.org/packages/ComplexHeatmap/
Package Downloads Report Download Stats

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