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Genome Level Trellis Layout

Bioconductor version: Release (3.18)

Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("gtrellis")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Make Genome-level Trellis Graph HTML R Script
Reference Manual PDF


biocViews Sequencing, Software, Visualization
Version 1.34.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License MIT + file LICENSE
Depends R (>= 3.1.2), grid, IRanges, GenomicRanges
Imports circlize (>= 0.4.8), GetoptLong, grDevices, utils
System Requirements
URL https://github.com/jokergoo/gtrellis
See More
Suggests testthat (>= 1.0.0), knitr, RColorBrewer, markdown, rmarkdown, ComplexHeatmap(>= 1.99.0), Cairo, png, jpeg, tiff
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gtrellis_1.34.0.tar.gz
Windows Binary gtrellis_1.34.0.zip (64-bit only)
macOS Binary (x86_64) gtrellis_1.34.0.tgz
macOS Binary (arm64) gtrellis_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gtrellis
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gtrellis
Bioc Package Browser https://code.bioconductor.org/browse/gtrellis/
Package Short Url https://bioconductor.org/packages/gtrellis/
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