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Rtpca

Thermal proximity co-aggregation with R


Bioconductor version: Release (3.18)

R package for performing thermal proximity co-aggregation analysis with thermal proteome profiling datasets to analyse protein complex assembly and (differential) protein-protein interactions across conditions.

Author: Nils Kurzawa [aut, cre], André Mateus [aut], Mikhail M. Savitski [aut]

Maintainer: Nils Kurzawa <nilskurzawa at gmail.com>

Citation (from within R, enter citation("Rtpca")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rtpca")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rtpca")
Introduction to Rtpca HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Proteomics, Software
Version 1.12.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3
Depends R (>= 4.0.0), stats, dplyr, tidyr
Imports Biobase, methods, ggplot2, pROC, fdrtool, splines, utils, tibble
System Requirements
URL
Bug Reports https://support.bioconductor.org/
See More
Suggests knitr, BiocStyle, TPP, testthat, rmarkdown
Linking To
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rtpca_1.12.0.tar.gz
Windows Binary Rtpca_1.12.0.zip (64-bit only)
macOS Binary (x86_64) Rtpca_1.12.0.tgz
macOS Binary (arm64) Rtpca_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rtpca
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rtpca
Bioc Package Browser https://code.bioconductor.org/browse/Rtpca/
Package Short Url https://bioconductor.org/packages/Rtpca/
Package Downloads Report Download Stats